We’ve had a recurrence of the problem I reported a month ago and so last night we installed an update to the database software we use. I’m told the update contains fixes relevant to the problems we have been experiencing, so here’s hoping it brings some increased reliability with it.
Please accept out apologies if you experienced some disruption last night while I was updating the software.
I thought I’d write a note about why we lost the Copac service for a couple of hours yesterday.
The short of it is, that our database software hung when it tried to read a corrupted file in which it keeps track of sessions. The result was that everyone’s search process hung and so frustrated users kept re-trying their searches, which created more hung sessions until the system was full of hung processes and with no CPU or memory left. Once we had deleted the corrupted file, everything was okay.
The long version goes something like this… From what I remember, things started going pear-shaped a little before noon when the machine running the service started becoming unresponsive. A quick look at the output of top showed we had far more search sessions running than normal and that the system was almost out of swap space.
It wasn’t clear why this was happening and because the system was running out of swap it was very difficult to diagnose the problem. It was difficult to run programs from the command line as, more often than not, they immediately died with the message “out of memory.” I did manage to shutdown the web server in an effort to lighten the load and stop more search sessions being created. It was proving almost impossible to kill off the existing search sessions. In Unix a “kill -9″ on a process should immediately stop the process and release its memory back to the system. But yesterday a “kill -9″ was having no effect on some processes and those that we did manage to kill were being listed as “defunct” and still seemed to be holding onto memory. In the end we just thought it would be best to re-boot the system and hope that it would solve whatever the problem was.
It took ages for the system to shut itself down – presumably because the shutdown procedures weren’t working with no memory to work in. Anyway, it did finally reboot and within minutes of the system coming up it became overloaded with search sessions and ran out of memory again.
We immediately shut down the web server again. However, search sessions were still being created by people using Z39.50 and so we had to edit the system configuration files to stop inetd spawning more Z39.50 search sessions. Editing inetd.conf didn’t prove to be the trivial task it should have been, but we did get it done eventually. We then tried killing off the 500 or so search sessions that were hogging the system — and that proved difficult too. Many of the processes refused to die. So, after sitting staring at the screen for about 15 minutes, unable to run programs because there was no memory and wondering what on earth do we do now, the system recovered itself. The killed off processes did finally die, memory was released and we could do stuff again!
A bit of investigation showed that the search processes weren’t getting very far into their initialisation procedure before hanging or going into an infinite loop. I used the Solaris truss program to see what files the search process was reading and what system calls it was making. Truss showed that the process was going off into cloud cuckoo land just after reading a file the database software uses to track sessions. So I deleted that file and everything started working again! The file got re-created next time a search process ran — presumably the file had become corrupted.